miRBase entry: cfa-mir-148a

Stem-loop cfa-mir-148a


Accession
MI0008018
Description
Canis familiaris cfa-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148


Sequence

aaaguucugagacacuccgacucugaauaugauagaagUCAGUGCACUACAGAACUUUGU
(((((((((((.((((..(((((((.......))).))))))))..)).)))))))))..

Structure
--         -  -a    cc    -   aa 
  aaaguucug ag  cacu  gacu cug  u
  ||||||||| ||  ||||  |||| |||  a
  UUUCAAGAC UC  GUGA  CUga gau  u
UG         A  AC    --    a   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 39301847-39301906 [-]

Database links

Mature cfa-miR-148a

Accession MIMAT0006622
Description Canis familiaris cfa-miR-148a mature miRNA
Sequence 39 - UCAGUGCACUACAGAACUUUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415