miRBase entry: cfa-mir-30d

Stem-loop cfa-mir-30d


Accession
MI0008012
Description
Canis familiaris cfa-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

UGUAAACAUCCCCGACUGGAAGCUggaagacagcaaagcuuucagucagauguuugcugc
.(((((((((...(((((((((((............))))))))))).)))))))))...

Structure
--U         CCC           ggaag 
   GUAAACAUC   GACUGGAAGCU     a
   |||||||||   |||||||||||      
   cguuuguag   cugacuuucga     c
cgu         --a           aacga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr13: 30910306-30910365 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-30d

Accession MIMAT0006616
Description Canis familiaris cfa-miR-30d mature miRNA
Sequence 1 - UGUAAACAUCCCCGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415