miRBase entry: cfa-mir-27b

Stem-loop cfa-mir-27b

Accession

MI0008009

Description

Canis familiaris cfa-mir-27b precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

agagcuuagcugauuggugaacagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure

--           g    g       ugac   u 
  agagcuuagcu auug ugaacag    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u

Annotation confidence Not enough data

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Genome context

chr1: 71678117-71678179 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-27b

Accession	MIMAT0006613
Description	Canis familiaris cfa-miR-27b mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415