miRBase entry: cfa-mir-125a

Stem-loop cfa-mir-125a

Accession

MI0008005

Description

Canis familiaris cfa-mir-125a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

UCCCUGAGACCCUUUAACCUGUgaggacauccagggucacaggugagguucuugggagcc
((((.((((.((((..((((((((((....))....)))))))))))).))))))))...

Structure

---    U    C    UA        ----  a 
   UCCC GAGA CCUU  ACCUGUga    gg c
   |||| |||| ||||  ||||||||    ||  
   aggg uucu ggag  uggacacu    cc a
ccg    -    u    --        ggga  u

Annotation confidence Not enough data

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Genome context

chr1: 105400273-105400332 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-125a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-125a

Accession	MIMAT0006609
Description	Canis familiaris cfa-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUUAACCUGU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415