miRBase entry: cfa-mir-371

Stem-loop cfa-mir-371


Accession
MI0007996
Description
Canis familiaris cfa-mir-371 precursor miRNA
Gene family
MIPF0000068; mir-290


Sequence

ACUCAAAAAAUGGCGGCACUUUccuaccuagaacagaaagugcccccacaguuugagugg
(((((((...(((.(((((((((............))))))))).)))...)))))))..

Structure
--       AAA   C         cuacc 
  ACUCAAA   UGG GGCACUUUc     u
  |||||||   ||| |||||||||      
  ugaguuu   acc ccgugaaag     a
gg       gac   c         acaag 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence appears to be antisense to the annotated members of the mir-371 family in oter mammals. The orientation of the dog sequence here is supported by 66 miR reads and 2 miR* reads [1].

Genome context
chr1: 103406620-103406679 [+]

Database links

Mature cfa-miR-371

Accession MIMAT0007747
Description Canis familiaris cfa-miR-371 mature miRNA
Sequence 1 - ACUCAAAAAAUGGCGGCACUUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415