miRBase entry: cel-mir-1823

Stem-loop cel-mir-1823


Accession
MI0007985
Description
Caenorhabditis elegans cel-mir-1823 precursor miRNA

Literature search
1 open access papers mention cel-mir-1823
(1 sentences)

Sequence

3105 reads, 20 reads per million, 12 experiments
cuuugaccugaacgucACCCCUAACCCUAUGCAGUAUUUggagcucauaaaaUACUGGAAGUGUUUAGGAGUAAugcucaguugucagaa
.((((((((((.(((.((.(((((.(((.(.((((((((..........)))))))).))).).))))).)).))).))))..)))))).

Structure
c      --    a   c  C     C -  A G        ggag 
 uuugac  cuga cgu AC CCUAA C CU U CAGUAUUU    c
 ||||||  |||| ||| || ||||| | || | ||||||||     
 agacug  gacu guA UG GGAUU G GA A GUCAUaaa    u
a      uu    c   A  A     U U  - G        auac 


Annotation confidence High
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Comments
This sequence was erroneously named mir-808 in [1].

Genome context
chrI: 12608619-12608708 [+]

Database links

Mature cel-miR-1823-3p

Accession MIMAT0006590
Description Caenorhabditis elegans cel-miR-1823-3p mature miRNA
Sequence 53 - UACUGGAAGUGUUUAGGAGUAA - 74
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature cel-miR-1823-5p

Accession MIMAT0032035
Description Caenorhabditis elegans cel-miR-1823-5p mature miRNA
Sequence 17 - ACCCCUAACCCUAUGCAGUAUUU - 39
Evidence not_experimental
Database links

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 18042455
    Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
    "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
    "Mol Cell (2007) 28:598-613