miRBase entry: cel-mir-1817

Stem-loop cel-mir-1817


Accession
MI0007979
Description
Caenorhabditis elegans cel-mir-1817 precursor miRNA


Sequence

196 reads, 40 reads per million, 10 experiments
uguacauuucaauuuucgagUAGCCAAUGUCUUCUCUAUCAUGcauuuuacaaauaaugaguacaugauagugaaauauuugcuuccugaauuucagagauguuu
...(((((((....((((.(.(((.(((((.(((.((((((((.((((..........)))).)))))))).)))))))).))).).)))).....)))))))..

Structure
ugu       -aauu    a U   C     C   U        c    uaca 
   acauuuc     uucg g AGC AAUGU UUC CUAUCAUG auuu    a
   |||||||     |||| | ||| ||||| ||| |||||||| ||||     
   uguagag     aagu c ucg uuaua aag gauaguac ugag    a
-uu       acuuu    c u   u     -   u        a    uaau 


Annotation confidence Not enough data
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Comments
This sequence was erroneously named mir-801 in [1].

Genome context
chrI: 10869370-10869474 [-]

Database links

Mature cel-miR-1817

Accession MIMAT0006584
Description Caenorhabditis elegans cel-miR-1817 mature miRNA
Sequence 21 - UAGCCAAUGUCUUCUCUAUCAUG - 43
Evidence experimental
454 [1-2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  2. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415

  3. PubMed ID: 18042455
    Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
    "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
    "Mol Cell (2007) 28:598-613