Stem-loop sequence vvi-MIR828a

AccessionMI0007972 (change log)
DescriptionVitis vinifera miR828a stem-loop
Gene family MIPF0000544; MIR828
Literature search

5 open access papers mention vvi-MIR828a
(10 sentences)

Stem-loop 
   ----ua   a   u   g             uc   a      -  ---   -  ag a     u 
5'       uaa guu cuu cucaaaugaguau  caa caacag cu   ugu ga  c augau a
         ||| ||| ||| |||||||||||||  ||| |||||| ||   ||| ||  | |||||  
3'       auu caa gaa gaguuuacucgua  guu guuguu gg   acg cu  g uacug c
   guaaaa   c   c   g             ga   -      a  ugu   u  cu a     u
Get sequence
Deep sequencing
71 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr16: 21724308-21724429 [+]
intergenic
Database links

Mature sequence vvi-miR828a

Accession MIMAT0006577
Sequence

10 -  

ucuugcucaaaugaguauucca

 - 31

Get sequence
Deep sequencing7 reads, 2 experiments
Evidence by similarity; MI0005384

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).