Stem-loop sequence vvi-MIR477a

AccessionMI0007970 (change log)
Previous IDsvvi-MIR477
DescriptionVitis vinifera miR477 stem-loop
Gene family MIPF0000216; MIR477
Literature search

2 open access papers mention vvi-MIR477a
(2 sentences)

Stem-loop 
   --g     gu   uc       aagg             u g  gau 
5'    aaguu  caa  ucccuca    cuuccaauuuucc g cu   u
      |||||  |||  |||||||    ||||||||||||| | ||    
3'    uucga  guu  agggggu    gaagguugaaagg u ga   a
   cca     ag   cc       gaca             u g  acu
Get sequence
Deep sequencing
92 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 22740261-22740354 [+]
intergenic
Database links

Mature sequence vvi-miR477a

Accession MIMAT0006575
Previous IDsvvi-miR477
Sequence

11 -  

aucucccucaaaggcuuccaa

 - 31

Get sequence
Deep sequencing83 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).