Stem-loop sequence vvi-MIR399f

Accession

MI0007962 (change log)

Description

Vitis vinifera miR399f stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention vvi-MIR399f
(10 sentences)

Stem-loop

   -------      uuaga    c      g        ---u    ccc   ua      ucg 
5'        guugca     gggc aaaucu cuuuggca    gaag   auu  gcaggc   u
          ||||||     |||| |||||| ||||||||    ||||   |||  ||||||    
3'        uaacgu     ccug uuuaga gaagccgu    cuuc   uga  cgucug   c
   gucuucu      -----    -      g        cgcu    ---   --      ugu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (12X; GCA_000003745.2): chr10: 2995807-2995913 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR399f

• vvi-MIR399f: chr10: 2995807-2995913 [-]
• vvi-MIR399e: chr10: 2992220-2992331 [-]
• vvi-MIR399a: chr10: 2989450-2989546 [+]
• vvi-MIR399d: chr10: 2988021-2988125 [-]

Database links

• EntrezGene:MIR399F
• miRBase Tracker:MI0007962

Mature sequence vvi-miR399f

• Accession: MIMAT0006567
• Sequence: 76 - ugccgaaggagauuuguccug - 96
• Evidence: by similarity; MI0001020

References

1. PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).