Stem-loop sequence vvi-MIR399d

Accession

MI0007961 (change log)

Description

Vitis vinifera miR399d stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention vvi-MIR399d
(10 sentences)

Stem-loop

   --g      aua                      ggcgaucacaagccaaug 
5'    uaaauu   gagcagauuucuuuuggcagau                  u
      ||||||   ||||||||||||||||||||||                  g
3'    auuuaa   cucguuuagaggaaaccgucug                  c
   uca      gug                      ugugaguuacgggaaacu 

Deep sequencing

131 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr10: 2988021-2988125 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR399d

• vvi-MIR399f: chr10: 2995807-2995913 [-]
• vvi-MIR399e: chr10: 2992220-2992331 [-]
• vvi-MIR399a: chr10: 2989450-2989546 [+]
• vvi-MIR399d: chr10: 2988021-2988125 [-]
• vvi-MIR399h: chr10: 2983545-2983634 [+]
• vvi-MIR399g: chr10: 2981247-2981359 [-]

Database links

• EntrezGene:MIR399D
• miRBase Tracker:MI0007961

Mature sequence vvi-miR399d

• Accession: MIMAT0006566
• Sequence: 75 - ugccaaaggagauuugcucgu - 95
• Deep sequencing: 131 reads, 2 experiments
• Evidence: by similarity; MI0002348

References

1. PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).