Stem-loop sequence vvi-MIR397a

AccessionMI0007956 (change log)
DescriptionVitis vinifera miR397a stem-loop
Gene family MIPF0000120; MIR397
Literature search

5 open access papers mention vvi-MIR397a
(15 sentences)

Stem-loop 
   gaagaaa    c              ug   ----a    ga  uau        u --a       
5'        acau auugagugcagcgu  aug     aacu  ag   uccauuuu c   gcuucu 
          |||| ||||||||||||||  |||     ||||  ||   |||||||| |   ||||| u
3'        ugua uaacucacgucgcg  uac     uugg  uc   ggguagaa g   ugaagu 
   ------c    c              gu   cuuag    --  -uu        c gcc
Get sequence
Deep sequencing
7125 reads, 450 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
NW_003724218.1: 139445-139562 [-]
intergenic
Database links

Mature sequence vvi-miR397a

Accession MIMAT0006561
Sequence

11 -  

ucauugagugcagcguugaug

 - 31

Get sequence
Deep sequencing6813 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).