Stem-loop sequence vvi-MIR396c

AccessionMI0007955 (change log)
DescriptionVitis vinifera miR396c stem-loop
Gene family MIPF0000047; MIR396
Literature search

5 open access papers mention vvi-MIR396c
(28 sentences)

Stem-loop 
   --   u     c                 a     --     ag   u   cuuc 
5'   uuc gugau uuccacagcuuucuuga cuguu  uugga  ccu cca    c
     ||| ||||| ||||||||||||||||| |||||  |||||  ||| |||    a
3'   gag cauua aagguguugaaaggacu gacaa  aacuu  gga ggu    u
   ga   u     c                 c     cc     ga   -   aacg
Get sequence
Deep sequencing
5858 reads, 250 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr4: 5119591-5119698 [-]
intergenic
Database links

Mature sequence vvi-miR396c

Accession MIMAT0006560
Sequence

11 -  

uuccacagcuuucuugaacug

 - 31

Get sequence
Deep sequencing5857 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).