Stem-loop sequence vvi-MIR393a

AccessionMI0007952 (change log)
DescriptionVitis vinifera miR393a stem-loop
Gene family MIPF0000083; MIR393
Literature search

4 open access papers mention vvi-MIR393a
(13 sentences)

Stem-loop 
   --      c      a       c    u     c    uu ucuuccaccucucuua       auca 
5'   ggugga aguucc aagggau gcau gaucc augg  a                ccagacu    u
     |||||| |||||| ||||||| |||| ||||| ||||  |                |||||||     
3'   cuaccu ucaagg uucccua cgua cuagg uacc  u                ggucuga    a
   ga      c      a       u    -     u    cu -----------uuucc       aaca
Get sequence
Deep sequencing
28 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr16: 17247187-17247312 [-]
intergenic
Database links

Mature sequence vvi-miR393a

Accession MIMAT0006557
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

Get sequence
Deep sequencing9 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).