Stem-loop sequence vvi-MIR169q

AccessionMI0007946 (change log)
DescriptionVitis vinifera miR169q stem-loop
Gene family MIPF0000037; MIR169_2
Literature search

8 open access papers mention vvi-MIR169q
(15 sentences)

Stem-loop 
   --    ug           a    g  u       au  g    a   c 
5'   aggg  gaauagagcca ggau ac ugccggc  uu cagu agu u
     ||||  ||||||||||| |||| || |||||||  || |||| |||  
3'   uccu  uuuaucucggu ccua ug acggccg  aa guca uua a
   uc    gg           -    a  u       ac  g    a   u
Get sequence
Deep sequencing
5575 reads, 350 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr11: 16384484-16384580 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169q
vvi-MIR169nchr11: 16380240-16380340 [+]
vvi-MIR169qchr11: 16384484-16384580 [+]
Database links

Mature sequence vvi-miR169q

Accession MIMAT0006551
Sequence

12 -  

gagccaaggaugacuugccgg

 - 32

Get sequence
Deep sequencing5551 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).