Stem-loop sequence vvi-MIR169n

AccessionMI0007944 (change log)
DescriptionVitis vinifera miR169n stem-loop
Gene family MIPF0000037; MIR169_2
Literature search

8 open access papers mention vvi-MIR169n
(15 sentences)

Stem-loop 
   --uga             aa     a      ggcaacugcagcaaggcau 
5'      guggaauagagcc  ggaug cuugcc                   a
        |||||||||||||  ||||| ||||||                    
3'      cacuuuaucucgg  ucuac gaacgg                   g
   ucucc             ag     -      ucaauacuggucaauuugg
Get sequence
Deep sequencing
9675 reads, 500 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr11: 16380240-16380340 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169n
vvi-MIR169nchr11: 16380240-16380340 [+]
vvi-MIR169qchr11: 16384484-16384580 [+]
Database links

Mature sequence vvi-miR169n

Accession MIMAT0006549
Sequence

12 -  

gagccaaggaugacuugccgg

 - 32

Get sequence
Deep sequencing5551 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).