miRBase entry: mml-mir-518c

Stem-loop mml-mir-518c


Accession
MI0007791
Description
Macaca mulatta mml-mir-518c precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

124 reads, 25 reads per million, 4 experiments
gcgagaagauuucaugcugugacucucUAGAGGGAAGCGCUUUCUGUUgucugaaagaaaaCAAAGCGCUUCUCUUUAGAGAGUuacgguuugagaaaagc
.........(((((.(((((((((((((((((((((((((((..((((.(((...))).))))))))))))))))))))))))))))))).))))).....

Structure
gcgagaaga     u                           UC    g   g 
         uuuca gcugugacucucUAGAGGGAAGCGCUU  UGUU ucu  
         ||||| |||||||||||||||||||||||||||  |||| ||| a
         agagu uggcauUGAGAGAUUUCUCUUCGCGAA  ACaa aga  
----cgaaa     u                           --    a   a 


Annotation confidence High
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Genome context
chr19: 49056071-49056171 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mml-mir-518c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-518c-3p

Accession MIMAT0006380
Description Macaca mulatta mml-miR-518c-3p mature miRNA
Sequence 62 - CAAAGCGCUUCUCUUUAGAGAGU - 84
Evidence experimental
Illumina [2]

Mature mml-miR-518c-5p

Accession MIMAT0026894
Description Macaca mulatta mml-miR-518c-5p mature miRNA
Sequence 28 - UAGAGGGAAGCGCUUUCUGUU - 48
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45