Stem-loop sequence mml-mir-342

Accession

MI0007704 (change log)

Description

Macaca mulatta miR-342 stem-loop

Gene family

MIPF0000190; mir-342

Literature search

3 open access papers mention mml-mir-342
(26 sentences)

Stem-loop

   gaaac     u        g      --ua      auuga      ugg  a 
5'      ugggc caagguga gggugc    ucugug     gggaca   uu a
        ||||| |||||||| ||||||    ||||||     ||||||   ||  
3'      auccg guuccacu cccacg    agacac     cucugu   ag u
   -auuc     -        g      cuaa      ----a      -ua  g 

Deep sequencing

58634 reads, 189 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr7: 162431440-162431538 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR342
• RNAcentral:URS000071B780_9544
• miRBase Tracker:MI0007704

Mature sequence mml-miR-342-5p

• Accession: MIMAT0006282
• Sequence: 19 - aggggugcuaucugugauuga - 39
• Deep sequencing: 24346 reads, 9 experiments
• Evidence: by similarity; MI0000805
• Database links:
  • RNAcentral:URS00005A8080_9544
• Predicted targets:
  • TargetScanVert:mml-miR-342-5p

Mature sequence mml-miR-342-3p

• Accession: MIMAT0006283
• Sequence: 61 - ucucacacagaaaucgcacccgu - 83
• Deep sequencing: 34272 reads, 9 experiments
• Evidence: by similarity; MI0000805
• Database links:
  • RNAcentral:URS0000148B91_9544
• Predicted targets:
  • TargetScanVert:mml-miR-342-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).