miRBase entry: mml-mir-200a

Stem-loop mml-mir-200a


Accession
MI0007663
Description
Macaca mulatta mml-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
2 open access papers mention mml-mir-200a
(2 sentences)

Sequence

57154 reads, 436 reads per million, 9 experiments
ccgggccccugugagCAUCUUACCGGACAGUGCUGGAuuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugacccac
..((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))..

Structure
cc   - c   g        -            -----------     A 
  ggg c ccu ugagCAUC UUACCGGACAGU           GCUGG u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
ca   a u   a        C            CAAUcucaguu     c 


Annotation confidence High
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Genome context
chr1: 259981-260070 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-200a-3p

Accession MIMAT0006233
Description Macaca mulatta mml-miR-200a-3p mature miRNA
Sequence 54 - UAACACUGUCUGGUAACGAUGU - 75
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-200a-5p

Accession MIMAT0026842
Description Macaca mulatta mml-miR-200a-5p mature miRNA
Sequence 16 - CAUCUUACCGGACAGUGCUGGA - 37
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45