Stem-loop sequence mml-mir-199a-2

Accession

MI0007662 (change log)

Description

Macaca mulatta miR-199a-2 stem-loop

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention mml-mir-199a-2
(2 sentences)

Stem-loop

      aac       u        c   u  g ag c 
5' gcc   ccagugu cagacuac ugu ca g  g u
   |||   ||||||| |||||||| ||| || |  |  
3' cgg   gguuaca gucugaug aca gu c  c c
      auu       c        -   u  g aa u 

Deep sequencing

193655 reads, 1.43e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr19: 10858564-10858634 [-]
• Overlapping transcripts:

  antisense

  ENSMMUT00000010224 ; C19orf52-201; intron 2

  ENSMMUT00000016867 ; SMARCA4-201; intron 25

  ENSMMUT00000016868 ; SMARCA4-202; intron 25

Database links

• EntrezGene:MIR199A-2
• RNAcentral:URS000075A5A2_9544
• miRBase Tracker:MI0007662

Mature sequence mml-miR-199a-5p

• Accession: MIMAT0006231
• Sequence: 6 - cccaguguucagacuaccuguuc - 28
• Deep sequencing: 15027 reads, 9 experiments
• Evidence: by similarity; MI0000242
• Database links:
  • RNAcentral:URS0000554A4F_9544
• Predicted targets:
  • TargetScanVert:mml-miR-199a-5p

Mature sequence mml-miR-199a-3p

• Accession: MIMAT0006232
• Sequence: 47 - acaguagucugcacauugguua - 68
• Deep sequencing: 178627 reads, 9 experiments
• Evidence: by similarity; MI0000242
• Database links:
  • RNAcentral:URS00003F2D94_9544
• Predicted targets:
  • TargetScanVert:mml-miR-199a-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).