miRBase entry: mml-mir-143

Stem-loop mml-mir-143


Accession
MI0007632
Description
Macaca mulatta mml-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
3 open access papers mention mml-mir-143
(4 sentences)

Sequence

11101920 reads, 115525 reads per million, 9 experiments
gcgcagcgccgugucucccagccugagGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCaggaagagagaaguuguucugcagc
((((((.((....((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).))))....)).)))).))

Structure
  -    c  cgug    c ag      G         G      U  -  ag 
gc gcag gc    ucuc c  ccugag UGCAGUGCU CAUCUC GG uc  u
|| |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
cg cguc ug    agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
  a    u  uuga    a aa      G         A      U  g  gg 


Annotation confidence High
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Genome context
chr6: 147550465-147550570 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-143-3p

Accession MIMAT0006201
Description Macaca mulatta mml-miR-143-3p mature miRNA
Sequence 61 - UGAGAUGAAGCACUGUAGCUC - 81
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-143-5p

Accession MIMAT0026823
Description Macaca mulatta mml-miR-143-5p mature miRNA
Sequence 28 - GUGCAGUGCUGCAUCUCUGG - 47
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45