Stem-loop sequence mml-mir-142

Accession

MI0007631 (change log)

Description

Macaca mulatta miR-142 stem-loop

Gene family

MIPF0000084; mir-142

Literature search

2 open access papers mention mml-mir-142
(41 sentences)

Stem-loop

   g        g   c           a         uaa ag a 
5'  acagugca uca ccauaaaguag aagcacuac   c  c c
    |||||||| ||| ||||||||||| |||||||||   |  |  
3'  ugucaugu agu gguauuucauc uuugugaug   g  g u
   g        g   a           c         -ug ga g 

Deep sequencing

47287 reads, 200 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr16: 31321566-31321652 [+]
• Overlapping transcripts:

  antisense

  ENSMMUT00000010123 ; INTS2-201; intron 9

Database links

• EntrezGene:MIR142
• RNAcentral:URS000075AE07_9544
• miRBase Tracker:MI0007631

Mature sequence mml-miR-142-5p

• Accession: MIMAT0006199
• Sequence: 16 - cauaaaguagaaagcacuacu - 36
• Deep sequencing: 4993 reads, 9 experiments
• Evidence: by similarity; MI0000458
• Database links:
  • RNAcentral:URS00001E0AEA_9544
• Predicted targets:
  • TargetScanVert:mml-miR-142-5p

Mature sequence mml-miR-142-3p

• Accession: MIMAT0006200
• Sequence: 52 - uguaguguuuccuacuuuaugga - 74
• Deep sequencing: 42294 reads, 9 experiments
• Evidence: by similarity; MI0000458
• Database links:
  • RNAcentral:URS00002620A7_9544
• Predicted targets:
  • TargetScanVert:mml-miR-142-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).