Stem-loop sequence mml-mir-140

Accession

MI0007630 (change log)

Description

Macaca mulatta miR-140 stem-loop

Gene family

MIPF0000085; mir-140

Literature search

2 open access papers mention mml-mir-140
(6 sentences)

Stem-loop

   u       ucucu        -  a             a       uu   uc 
5'  gugucuc     guguccug cc gugguuuuacccu ugguagg  acg  a
    |||||||     |||||||| || ||||||||||||| |||||||  |||   
3'  cacgggg     cauaggac gg caccaagauggga accaucu  ugu  u
   c       ----c        a  -             c       --   cg 

Deep sequencing

1495034 reads, 9.12e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr20: 54375562-54375661 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR140
• RNAcentral:URS00005471BA_9544
• miRBase Tracker:MI0007630

Mature sequence mml-miR-140-5p

• Accession: MIMAT0006197
• Sequence: 23 - cagugguuuuacccuaugguag - 44
• Deep sequencing: 74722 reads, 9 experiments
• Evidence: by similarity; MI0000456
• Database links:
  • RNAcentral:URS000026261D_9544
• Predicted targets:
  • TargetScanVert:mml-miR-140-5p

Mature sequence mml-miR-140-3p

• Accession: MIMAT0006198
• Sequence: 62 - uaccacaggguagaaccacgg - 82
• Deep sequencing: 1420276 reads, 9 experiments
• Evidence: by similarity; MI0000456
• Database links:
  • RNAcentral:URS00000821E0_9544
• Predicted targets:
  • TargetScanVert:mml-miR-140-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).