miRBase entry: mml-mir-138

Stem-loop mml-mir-138


Accession
MI0007628
Description
Macaca mulatta mml-mir-138 precursor miRNA
Gene family
MIPF0000075; mir-138

Literature search
1 open access papers mention mml-mir-138
(1 sentences)

Sequence

76962 reads, 478 reads per million, 9 experiments
cguugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagcgcauccucuuacccggcUAUUUCACGACACCAGGGUUgcauca
.(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure
c u   u  AG             UCA     -ac   c  cg 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg UG  GACCACAGCACUU   Ucggc   uuc uc  a
a u   U  -G             -UA     cca   -  cu 


Annotation confidence High
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Genome context
chr20: 41029997-41030080 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-138
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-138-5p

Accession MIMAT0006194
Description Macaca mulatta mml-miR-138-5p mature miRNA
Sequence 10 - AGCUGGUGUUGUGAAUCAGGCCG - 32
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-138-3p

Accession MIMAT0026822
Description Macaca mulatta mml-miR-138-3p mature miRNA
Sequence 59 - UAUUUCACGACACCAGGGUU - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45