miRBase entry: mml-mir-133b

Stem-loop mml-mir-133b


Accession
MI0007622
Description
Macaca mulatta mml-mir-133b precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
2 open access papers mention mml-mir-133b
(2 sentences)

Sequence

2613 reads, 20 reads per million, 9 experiments
ccucagaagaaagaugcccccugcucuggcUGGUCAAACGGAACCAAGUCcgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaauucccaguccuuggaga
.(((.((.((..(((((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))..))....)).)).))).

Structure
c   a  a  --aa  --    --       c        CA  C  A      U  g    c 
 cuc ga ga    ga  ugcc  cccugcu uggcUGGU  AA GG ACCAAG Cc ucuu  
 ||| || ||    ||  ||||  ||||||| ||||||||  || || |||||| || |||| c
 gag uu cu    cu  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agag  
a   g  c  gacc  ua    uc       c        AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
chr4: 53110676-53110794 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-133b-3p

Accession MIMAT0006189
Description Macaca mulatta mml-miR-133b-3p mature miRNA
Sequence 66 - UUUGGUCCCCUUCAACCAGCUA - 87
Evidence experimental
Illumina [2]

Mature mml-miR-133b-5p

Accession MIMAT0026818
Description Macaca mulatta mml-miR-133b-5p mature miRNA
Sequence 31 - UGGUCAAACGGAACCAAGUC - 50
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45