miRBase entry: mml-mir-30e

Stem-loop mml-mir-30e


Accession
MI0007602
Description
Macaca mulatta mml-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
3 open access papers mention mml-mir-30e
(5 sentences)

Sequence

1580760 reads, 11564 reads per million, 9 experiments
gggcagucuucgcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguucagaggagcUUUCAGUCGGAUGUUUACAGCggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure
g        uc   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUcga g   c u
a        --   C            --           g aga u 


Annotation confidence High
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Genome context
chr1: 40059281-40059372 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-30e-5p

Accession MIMAT0006172
Description Macaca mulatta mml-miR-30e-5p mature miRNA
Sequence 17 - UGUAAACAUCCUUGACUGGAAG - 38
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-30e-3p

Accession MIMAT0026807
Description Macaca mulatta mml-miR-30e-3p mature miRNA
Sequence 60 - UUUCAGUCGGAUGUUUACAGC - 80
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45