miRBase entry: mml-mir-29c

Stem-loop mml-mir-29c


Accession
MI0007598
Description
Macaca mulatta mml-mir-29c precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
3 open access papers mention mml-mir-29c
(3 sentences)

Sequence

117402 reads, 741 reads per million, 9 experiments
aucucuuacacaggcugaCCGAUUUCUCCUGGUGUUCAGagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure
au        -  ggc           UCC       C   gucu 
  cucuuaca ca   ugaCCGAUUUC   UGGUGUU AGa    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 


Annotation confidence Not enough data
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Genome context
chr1: 158780300-158780387 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-29c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-29c-3p

Accession MIMAT0006169
Description Macaca mulatta mml-miR-29c-3p mature miRNA
Sequence 54 - UAGCACCAUUUGAAAUCGGUUA - 75
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-29c-5p

Accession MIMAT0026804
Description Macaca mulatta mml-miR-29c-5p mature miRNA
Sequence 19 - CCGAUUUCUCCUGGUGUUCAG - 39
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45