Stem-loop sequence mml-mir-29b-2

Accession

MI0007597 (change log)

Description

Macaca mulatta miR-29b-2 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

5 open access papers mention mml-mir-29b-2
(12 sentences)

Stem-loop

            -          c      g  u    uuuucc 
5' cuucuggaa gcugguuuca auggug cu agau      a
   ||||||||| |||||||||| |||||| || ||||       
3' gaggauuuu ugacuaaagu uaccac ga ucua      u
            g          u      -  -    uguuuc 

Deep sequencing

329445 reads, 1.84e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr1: 158779716-158779796 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-29b-2

• mml-mir-29b-2: chr1: 158779716-158779796 [+]
• mml-mir-29c: chr1: 158780300-158780387 [+]

Database links

• EntrezGene:MIR29B-2
• RNAcentral:URS00001E96DA_9544
• miRBase Tracker:MI0007597

Mature sequence mml-miR-29b-2-5p

• Accession: MIMAT0031079
• Sequence: 9 - agcugguuucacaugguggcuuaga - 33
• Deep sequencing: 6149 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-29b-2-5p

Mature sequence mml-miR-29b-3p

• Accession: MIMAT0006168
• Sequence: 52 - uagcaccauuugaaaucaguguu - 74
• Deep sequencing: 646264 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000024463E_9544
• Predicted targets:
  • TargetScanVert:mml-miR-29b-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).