Stem-loop sequence mml-mir-29b-1

Accession

MI0007596 (change log)

Description

Macaca mulatta miR-29b-1 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

5 open access papers mention mml-mir-29b-1
(12 sentences)

Stem-loop

   -         -          u      gu      uuaaa 
5'  cuucaggaa gcugguuuca auggug  uuagau     u
    ||||||||| |||||||||| ||||||  ||||||     a
3'  gggguucuu ugacuaaagu uaccac  gaucug     g
   g         g          u      --      uuagu 

Deep sequencing

327727 reads, 1.84e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chr3: 157003735-157003815 [-]
• Overlapping transcripts:

  sense

  ENSMMUT00000007228 ; PLXNA4-201; intron 1

  ENSMMUT00000041772 ; PLXNA4-202; intron 3

Clustered miRNAs

< 10kb from mml-mir-29b-1

• mml-mir-29b-1: chr3: 157003735-157003815 [-]
• mml-mir-29a: chr3: 157003023-157003086 [-]

Database links

• EntrezGene:MIR29B-1
• RNAcentral:URS0000150A7D_9544
• miRBase Tracker:MI0007596

Mature sequence mml-miR-29b-1-5p

• Accession: MIMAT0026803
• Sequence: 9 - agcugguuucauauggugguuuaga - 33
• Deep sequencing: 4725 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-29b-1-5p

Mature sequence mml-miR-29b-3p

• Accession: MIMAT0006168
• Sequence: 51 - uagcaccauuugaaaucaguguu - 73
• Deep sequencing: 646264 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000024463E_9544
• Predicted targets:
  • TargetScanVert:mml-miR-29b-3p

References

1. PMID:18186931 "Identification of novel homologous microRNA genes in the rhesus macaque genome" Yue J, Sheng Y, Orwig KE BMC Genomics. 9:8(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).