miRBase entry: mml-let-7e

Stem-loop mml-let-7e


Accession
MI0007576
Description
Macaca mulatta mml-let-7e precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
4 open access papers mention mml-let-7e
(9 sentences)

Sequence

230899 reads, 1591 reads per million, 9 experiments
cccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucaCUAUACGGCCUCCUAGCUUUCCccagg
((.(((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))

Structure
  c   cU   G                U  -------  a g 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
|| |||  ||| |||||||||||||||| ||       || |  
gg ccC  UUC AUCCUCCGGCAUAUCa cu       cc c c
  a   CU   G                -  agaggaa  - a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr19: 46928012-46928090 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mml-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-let-7e-5p

Accession MIMAT0006155
Description Macaca mulatta mml-let-7e-5p mature miRNA
Sequence 8 - UGAGGUAGGAGGUUGUAUAGUU - 29
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-let-7e-3p

Accession MIMAT0026792
Description Macaca mulatta mml-let-7e-3p mature miRNA
Sequence 53 - CUAUACGGCCUCCUAGCUUUCC - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18186931
    Identification of novel homologous microRNA genes in the rhesus macaque genome
    Yue J, Sheng Y, Orwig KE
    BMC Genomics (2008) 9:8

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45