miRBase entry: gga-mir-458a

Stem-loop gga-mir-458a


Accession
MI0007567
Description
Gallus gallus gga-mir-458a precursor miRNA
Gene family
MIPF0000179; mir-458

Literature search
2 open access papers mention gga-mir-458a
(2 sentences)

Sequence

132852 reads, 1548 reads per million, 5 experiments
agcagagccgcggccguggugcagauggcAGCGCCAUUUUCAGAGCUAUAaacagcgucauugucAUAGCUCUUUGAAUGGUACUGCcauauguacuggaaaaacagcaucuaugc
.(((.((..((..((..((((((.(((((((.(((((((..((((((((..((((.....)))).))))))))..))))))).))))))).)))))))).......))..)).)))

Structure
a   g  cc  -----gg  gu      g       C       UC        Aa    c 
 gca ag  gc       cc  ggugca auggcAG GCCAUUU  AGAGCUAU  acag g
 ||| ||  ||       ||  |||||| ||||||| |||||||  ||||||||  |||| u
 cgu uc  cg       gg  ucaugu uacCGUC UGGUAAG  UCUCGAUA  uguu c
-   a  ua  acaaaaa  --      a       A       UU        -c    a 


Annotation confidence Not enough data
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Genome context
chr13: 8233311-8233426 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-458a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-458a-5p

Accession MIMAT0007745
Description Gallus gallus gga-miR-458a-5p mature miRNA
Sequence 30 - AGCGCCAUUUUCAGAGCUAUA - 50
Evidence experimental
Illumina [1]

Mature gga-miR-458a-3p

Accession MIMAT0007746
Description Gallus gallus gga-miR-458a-3p mature miRNA
Sequence 66 - AUAGCUCUUUGAAUGGUACUGC - 87
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40

  2. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964