Stem-loop sequence gga-mir-449b

Accession

MI0007566 (change log)

Description

Gallus gallus miR-449b stem-loop

Gene family

MIPF0000133; mir-449

Literature search

4 open access papers mention gga-mir-449b
(7 sentences)

Stem-loop

   -------------    ug  u  aa         cugu   c       g gc 
5'              ccug  gc gg  ggcagugug    uag ggcugcu u  u
                ||||  || ||  |||||||||    ||| ||||||| |  g
3'              ggac  cg cc  ccgucacac    auc cugacga g  a
   cgucaucagauag    gu  u  -a         ---c   a       g ua 

Deep sequencing

23 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 16703096-16703189 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000043537 ; CDC20B-201; intron 2

Clustered miRNAs

< 10kb from gga-mir-449b

• gga-mir-449c: chrZ: 16704099-16704170 [-]
• gga-mir-449b: chrZ: 16703096-16703189 [-]
• gga-mir-449a: chrZ: 16702946-16703031 [-]
• gga-mir-449d: chrZ: 16702080-16702162 [-]

Database links

• EntrezGene:MIR449B
• miRBase Tracker:MI0007566

Mature sequence gga-miR-449b-5p

• Accession: MIMAT0007743
• Previous IDs: gga-miR-449b
• Sequence: 13 - aggcagugugcuguuagcggcug - 35
• Deep sequencing: 17 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-449b-5p
  • miRDB:gga-miR-449b-5p

Mature sequence gga-miR-449b-3p

• Accession: MIMAT0007744
• Previous IDs: gga-miR-449b*
• Sequence: 51 - cagucacuaccacacugccac - 71
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-449b-3p
  • miRDB:gga-miR-449b-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).