miRBase entry: gga-mir-15c

Stem-loop gga-mir-15c


Accession
MI0007562
Description
Gallus gallus gga-mir-15c precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
14 open access papers mention gga-mir-15c
(41 sentences)

Sequence

2245 reads, 37 reads per million, 5 experiments
ugaggagaugUAGCAGCACAUCAUGGUUUGUAgggacaaggagauaCAGACCAUUCUGGGCUGCCUCAuuaccuca
(((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).)))))

Structure
     a    UA     A  UC          gggac 
ugagg gaug  GCAGC CA  AUGGUUUGUA     a
||||| ||||  ||||| ||  ||||||||||      
acucc uuAC  CGUCG GU  UACCAGACau     a
     a    UC     G  CU          agagg 


Annotation confidence Not enough data
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Genome context
chr4: 4071811-4071886 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-15c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-15c-5p

Accession MIMAT0007737
Description Gallus gallus gga-miR-15c-5p mature miRNA
Sequence 11 - UAGCAGCACAUCAUGGUUUGUA - 32
Evidence experimental
Illumina [1], Northern [2]

Mature gga-miR-15c-3p

Accession MIMAT0007738
Description Gallus gallus gga-miR-15c-3p mature miRNA
Sequence 47 - CAGACCAUUCUGGGCUGCCUCA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18511220
    Identification of novel chicken microRNAs and analysis of their genomic organization
    "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
    "Gene (2008) 418:34-40

  2. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964