Stem-loop sequence gga-mir-122b

Accession

MI0007547 (change log)

Description

Gallus gallus miR-122b stem-loop

Literature search

16 open access papers mention gga-mir-122b
(83 sentences)

Stem-loop

          agacag          --g       g ugg 
5' auuuuuc      ugugacacug   uguuuuu u   g
   |||||||      ||||||||||   ||||||| |   u
3' uggaaag      auauugugac   gcgaggg g   g
          auacag          gga       g uuu 

Deep sequencing

40 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 59089899-59089975 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000019955 ; UNC5C-201; intron 1

  ENSGALT00000037649 ; UNC5C-202; intron 1

Database links

• EntrezGene:MIR122B
• miRBase Tracker:MI0007547

Mature sequence gga-miR-122b

• Accession: MIMAT0007719
• Sequence: 12 - agugugacacugguguuuuu - 31
• Deep sequencing: 39 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-122b
  • miRDB:gga-miR-122b

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).