Stem-loop sequence gga-mir-1736

Accession

MI0007475 (change log)

Description

Gallus gallus miR-1736 stem-loop

Literature search

2 open access papers mention gga-mir-1736
(6 sentences)

Stem-loop

      ga  c ug            a    u  u         ----   c a 
5' gau  ca a  agguugagggca uucc ga aggugcuga    gca c u
   |||  || |  |||||||||||| |||| || |||||||||    ||| | c
3' cua  gu u  uccaacuccugu aagg cu uccacgacu    cgu g u
      ga  c gu            c    -  -         gaaa   c a 

Deep sequencing

52 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 139198640-139198738 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000027215 ; CARS2-201; intron 3

Database links

• EntrezGene:MIR1736
• miRBase Tracker:MI0007475

Mature sequence gga-miR-1736-5p

• Accession: MIMAT0007638
• Previous IDs: gga-miR-1736*
• Sequence: 18 - agggcaauuccugauaggugcu - 39
• Deep sequencing: 14 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1736-5p
  • miRDB:gga-miR-1736-5p

Mature sequence gga-miR-1736-3p

• Accession: MIMAT0007639
• Previous IDs: gga-miR-1736
• Sequence: 63 - agcaccuucggaacuguccuca - 84
• Deep sequencing: 37 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1736-3p
  • miRDB:gga-miR-1736-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).