Stem-loop sequence gga-mir-1728

Accession

MI0007466 (change log)

Description

Gallus gallus miR-1728 stem-loop

Literature search

1 open access papers mention gga-mir-1728
(2 sentences)

Stem-loop

            u   u          cau      a   --a    gagg 
5' gugaauuag uca cugguugauc   uggaag cug   gcuu    g
   ||||||||| ||| ||||||||||   |||||| |||   ||||    u
3' uacuuaguc agu gaccgacuag   gucuuc gac   ugga    g
            c   c          -au      g   aaa    gaaa 

Deep sequencing

1139 reads, 60 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 10981360-10981455 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000043548 ; PRRG3-201; intron 1

Database links

• EntrezGene:MIR1728
• miRBase Tracker:MI0007466

Mature sequence gga-miR-1728-5p

• Accession: MIMAT0007627
• Sequence: 16 - ugguugauccauuggaagacuga - 38
• Deep sequencing: 48 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1728-5p
  • miRDB:gga-miR-1728-5p

Mature sequence gga-miR-1728-3p

• Accession: MIMAT0007628
• Sequence: 62 - aggcuucuguagaucagccagc - 83
• Deep sequencing: 1090 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1728-3p
  • miRDB:gga-miR-1728-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).