miRBase entry: gga-mir-1684a

Stem-loop gga-mir-1684a


Accession
MI0007418
Description
Gallus gallus gga-mir-1684a precursor miRNA
Gene family
MIPF0001537; mir-1684

Literature search
4 open access papers mention gga-mir-1684a
(7 sentences)

Sequence

2666 reads, 34 reads per million, 5 experiments
uggaucggguuugaaaggagAGCUCUGCUUCCUCAUACAUACucaucuuuucuauggauAAGUAUGAGGAAAUGGAGCUCUccuuccauuccaccuguuuua
((((.(((((.((.(((((((((((((.((((((((((.((.((((.......)))).)).)))))))))).))))))))))))).))....))))).))))

Structure
    u     ---u  a             C          A  C    cu 
ugga cgggu    ug aaggagAGCUCUG UUCCUCAUAC UA ucau  u
|||| |||||    || ||||||||||||| |||||||||| || ||||  u
auuu gucca    ac uuccUCUCGAGGU AAGGAGUAUG Au ggua  u
    u     ccuu  c             A          A  a    uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gga-miR-1684a-5p

Accession MIMAT0007571
Description Gallus gallus gga-miR-1684a-5p mature miRNA
Sequence 21 - AGCUCUGCUUCCUCAUACAUAC - 42
Evidence experimental
Illumina [1]

Mature gga-miR-1684a-3p

Accession MIMAT0007572
Description Gallus gallus gga-miR-1684a-3p mature miRNA
Sequence 60 - AAGUAUGAGGAAAUGGAGCUCU - 81
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964