miRBase entry: gga-mir-1682

Stem-loop gga-mir-1682


Accession
MI0007416
Description
Gallus gallus gga-mir-1682 precursor miRNA

Literature search
1 open access papers mention gga-mir-1682
(1 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
gggaaaacaaagcccugacaguuggcccacccuaccgaggcugcccgUGGGUCAGAUGGAGCUGAGGGugccc
(((....(..(((((......((((((((((((....)))......)))))))))..)).)))..)....)))

Structure
   aaaa aa   -  ugacag         ------   a 
ggg    c  agc cc      uuggcccac      ccu c
|||    |  ||| ||      |||||||||      |||  
ccc    G  UCG GG      GACUGGGUg      gga c
   guGG AG   A  ----UA         cccguc   g 


Annotation confidence Not enough data
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Genome context
chr14: 4947156-4947228 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1682
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1682

Accession MIMAT0007569
Description Gallus gallus gga-miR-1682 mature miRNA
Sequence 48 - UGGGUCAGAUGGAGCUGAGGG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964