Stem-loop sequence gga-mir-1668

Accession

MI0007402 (change log)

Description

Gallus gallus miR-1668 stem-loop

Literature search

3 open access papers mention gga-mir-1668
(10 sentences)

Stem-loop

   --gagg  -u   c  c       c    ag     g   ug  g   
5'       gc  gcc ug agguggg uggg  cacag cac  ug gc 
         ||  ||| || ||||||| ||||  ||||| |||  || | u
3'       cg  cgg ac uccacuc acuc  guguc gug  gu cu 
   cuaaga  uu   u  u       -    cu     -   gu  g   

Deep sequencing

17 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (rul06e06.b1).

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr33: 217270-217359 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1668
• miRBase Tracker:MI0007402

Mature sequence gga-miR-1668-5p

• Accession: MIMAT0007551
• Previous IDs: gga-miR-1668*
• Sequence: 17 - gugggcugggagcacaggcacu - 38
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1668-5p
  • miRDB:gga-miR-1668-5p

Mature sequence gga-miR-1668-3p

• Accession: MIMAT0007552
• Previous IDs: gga-miR-1668
• Sequence: 54 - ugcuguguccucacucaccuu - 74
• Deep sequencing: 2 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1668-3p
  • miRDB:gga-miR-1668-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).