miRBase entry: gga-mir-1653

Stem-loop gga-mir-1653


Accession
MI0007385
Description
Gallus gallus gga-mir-1653 precursor miRNA

Literature search
1 open access papers mention gga-mir-1653
(1 sentences)

Sequence

73 reads, 1 reads per million, 4 experiments
ucaggaccgcucuguucccauuuguaugcccagcacugguccuggugucugcuaugguuuccaCAGGAGCUGUGCUGCAUGCAGGuguggaugcagcaucuugg
.(((((..(((....((((((((((((((..(((((.(.(((((.((...((....))...))))))).).)))))))))))))))).)))...))).))))).

Structure
u     cc   cugu   -           cc     u g     g  ucu  u 
 cagga  gcu    ucc cauuuguaugc  agcac g uccug ug   gc a
 |||||  |||    ||| |||||||||||  ||||| | ||||| ||   ||  
 guucu  cga    agg guGGACGUACG  UCGUG C AGGAC ac   ug u
g     -a   -cgu   u           --     U G     -  cuu  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 14383845-14383948 [-]

Database links

Mature gga-miR-1653

Accession MIMAT0007532
Description Gallus gallus gga-miR-1653 mature miRNA
Sequence 64 - CAGGAGCUGUGCUGCAUGCAGG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964