miRBase entry: gga-mir-1649

Stem-loop gga-mir-1649


Accession
MI0007381
Description
Gallus gallus gga-mir-1649 precursor miRNA

Literature search
1 open access papers mention gga-mir-1649
(1 sentences)

Sequence

9 reads, 1 reads per million, 5 experiments
gugcuguuggcucuccuccuccUCCUGCAGAAGGUGCGGCUGugcgcuccccaacggCUCCGUGCACUCUGCAGGCAcaggagugagcccugacccac
(((..((((((((..(((((...((((((((..((((((((((..........)))))..)))))..))))))))...))))).)))))..))).)))

Structure
   cu   --     uc     ccU        AG     --     gcgc 
gug  guu  ggcuc  cuccu   CCUGCAGA  GUGCG  GCUGu    u
|||  |||  |||||  |||||   ||||||||  |||||  |||||     
cac  cag  ccgag  gagga   GGACGUCU  CGUGC  Cggca    c
   -c   uc     -u     cAC        CA     CU     accc 


Annotation confidence Not enough data
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Genome context
chr3: 21881902-21881999 [+]

Database links

Mature gga-miR-1649-5p

Accession MIMAT0007526
Description Gallus gallus gga-miR-1649-5p mature miRNA
Sequence 23 - UCCUGCAGAAGGUGCGGCUG - 42
Evidence experimental
Illumina [1]

Mature gga-miR-1649-3p

Accession MIMAT0007527
Description Gallus gallus gga-miR-1649-3p mature miRNA
Sequence 58 - CUCCGUGCACUCUGCAGGCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964