Stem-loop sequence gga-mir-1621

Accession

MI0007350 (change log)

Description

Gallus gallus miR-1621 stem-loop

Stem-loop

   u    caa -    u  cu      c     c   c 
5'  ucgg   c cggc gc  cggugg accgu ucc g
    ||||   | |||| ||  |||||| ||||| ||| c
3'  agcc   g gccg cg  gccgcu uggca agg u
   g    cac c    c  -u      -     -   c 

Deep sequencing

5 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr28: 3620263-3620333 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1621

• gga-mir-1621: chr28: 3620263-3620333 [+]
• gga-mir-1565: chr28: 3621530-3621611 [+]
• gga-mir-9-1: chr28: 3623171-3623258 [+]

Database links

• EntrezGene:MIR1621
• miRBase Tracker:MI0007350

Mature sequence gga-miR-1621-5p

• Accession: MIMAT0007488
• Previous IDs: gga-miR-1621
• Sequence: 8 - accggcugccucgguggcac - 27
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1621-5p
  • miRDB:gga-miR-1621-5p

Mature sequence gga-miR-1621-3p

• Accession: MIMAT0007489
• Previous IDs: gga-miR-1621*
• Sequence: 45 - gguucgccgugccgccgcgc - 64
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1621-3p
  • miRDB:gga-miR-1621-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).