Stem-loop sequence gga-mir-1612

Accession

MI0007340 (change log)

Description

Gallus gallus miR-1612 stem-loop

Literature search

3 open access papers mention gga-mir-1612
(11 sentences)

Stem-loop

            -a    a ug        cuu          uuu 
5' cuuuuaagc  ucca u  gcucuuuu   ucuuucuuuu   a
   |||||||||  |||| |  ||||||||   ||||||||||    
3' ggagguucg  gggu a  cgaggaaa   aggaaggaga   u
            ac    c gu        ---          ugg 

Deep sequencing

5 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr9: 4975873-4975956 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000009328 ; SEPT2-201; intron 1

Database links

• EntrezGene:MIR1612
• miRBase Tracker:MI0007340

Mature sequence gga-miR-1612

• Accession: MIMAT0007478
• Sequence: 52 - gaaggaaaaggagcugacuggg - 73
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1612
  • miRDB:gga-miR-1612

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).