miRBase entry: gga-mir-1587

Stem-loop gga-mir-1587


Accession
MI0007314
Description
Gallus gallus gga-mir-1587 precursor miRNA

Literature search
2 open access papers mention gga-mir-1587
(2 sentences)

Sequence

22 reads, 2 reads per million, 4 experiments
ggcgccgccggggcacGGGCUGGGCUGGGCUGGGCAgcggagcgcggcaucgcggcugcucccguccuuuucuucuuccugcccuucguaaccgcu
((((..((.((((((.(((..(((..((((.(((.(((((..((((....)))).))))))))))))..)))....)))))))))..))...))))

Structure
    -cc  -c      c   --CU   CU    U   C     ag    g 
ggcg   gc  ggggca GGG    GGG  GGGC GGG Agcgg  cgcg c
||||   ||  |||||| |||    |||  |||| ||| |||||  ||||  
ucgc   ug  ucccgu ccu    cuu  ccug ccc ucguc  gcgc a
    caa  cu      -   ucuu   uu    -   -     -g    u 


Annotation confidence Not enough data
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Genome context
chr19: 1798669-1798764 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1587
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1587

Accession MIMAT0007449
Description Gallus gallus gga-miR-1587 mature miRNA
Sequence 17 - GGGCUGGGCUGGGCUGGGCA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964