miRBase entry: gga-mir-1574

Stem-loop gga-mir-1574


Accession
MI0007300
Description
Gallus gallus gga-mir-1574 precursor miRNA

Literature search
1 open access papers mention gga-mir-1574
(4 sentences)

Sequence

cagccaaugcuCUGUGACUUCUCCUUGUCAGAgcugggguauacugACAGGAGGAUGUCAGGAAGCUUcugcug
((((....(((.(.(((((((((((.(((((.((....))...)))))))))))).)))).).)))....))))

Structure
    caau   C G    -       U     --A  u 
cagc    gcu U UGAC UUCUCCU GUCAG   gc g
||||    ||| | |||| ||||||| |||||   ||  
gucg    CGA G ACUG AGGAGGA CAguc   ug g
    ucUU   A G    U       -     aua  g 


Annotation confidence Not enough data
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Genome context
chr10: 5628304-5628377 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1574
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1574-5p

Accession MIMAT0007434
Description Gallus gallus gga-miR-1574-5p mature miRNA
Sequence 12 - CUGUGACUUCUCCUUGUCAGA - 32
Evidence experimental
Illumina [1]

Mature gga-miR-1574-3p

Accession MIMAT0007435
Description Gallus gallus gga-miR-1574-3p mature miRNA
Sequence 47 - ACAGGAGGAUGUCAGGAAGCUU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964