Stem-loop sequence gga-mir-1565

Accession

MI0007290 (change log)

Description

Gallus gallus miR-1565 stem-loop

Stem-loop

                   c   g   gucg   ---      guc 
5' gggggcagagccgggc cgg ccc    cgg   ggggag   c
   |||||||||||||||| ||| |||    |||   ||||||   u
3' cccucguuuugguccg gcu ggg    gcc   ccccuc   g
                   u   -   ---a   uag      auu 

Deep sequencing

4 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr28: 3621530-3621611 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1565

• gga-mir-1621: chr28: 3620263-3620333 [+]
• gga-mir-1565: chr28: 3621530-3621611 [+]
• gga-mir-9-1: chr28: 3623171-3623258 [+]

Database links

• EntrezGene:MIR1565
• miRBase Tracker:MI0007290

Mature sequence gga-miR-1565

• Accession: MIMAT0007425
• Sequence: 57 - cgagggucgugccugguuuugcu - 79
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1565
  • miRDB:gga-miR-1565

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).