Stem-loop gga-mir-1560

Accession

MI0007285

Description

Gallus gallus gga-mir-1560 precursor miRNA

Sequence

112 reads, 2 reads per million, 4 experiments

uccuuagucacugcgugggggugGCGGCGCGAGCAGAGAGGCGCUgccguguccaaagcaGCAUCUCUGGACGCGCUCGUUCcuucugcguggcuccgcuugga
.....((((((.(((.(((((.(((((((((..((((((...(((((..........))))).))))))..))))).))))))))))))))))))((....)).

Structure

----uccuu      u   u     u    -     AG      GGC     cgug 
         agucac gcg ggggg gGCG GCGCG  CAGAGA   GCUgc    u
         |||||| ||| ||||| |||| |||||  ||||||   |||||     
         ucggug cgu cuucC UUGC CGCGC  GUCUCU   CGacg    c
agguucgcc      -   -     -    U     AG      --A     aaac 

Annotation confidence High

Genome context

chr11: 18874320-18874423 [-]

Mature gga-miR-1560-5p

• Accession: MIMAT0007417
• Description: Gallus gallus gga-miR-1560-5p mature miRNA
• Sequence: 24 - GCGGCGCGAGCAGAGAGGCGCU - 45
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1560-3p

• Accession: MIMAT0007418
• Description: Gallus gallus gga-miR-1560-3p mature miRNA
• Sequence: 61 - GCAUCUCUGGACGCGCUCGUUC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964