Stem-loop sequence gga-mir-1559

Accession

MI0007284 (change log)

Description

Gallus gallus miR-1559 stem-loop

Gene family

MIPF0001031; mir-1559

Literature search

2 open access papers mention gga-mir-1559
(6 sentences)

Stem-loop

      a   cu        u      cu     caagaa 
5' uag cuc  uucgaugc uguaug  acucc      u
   ||| |||  |||||||| ||||||  |||||       
3' auc gag  gagcuacg auguac  ugagg      g
      a   ac        u      au     acaauc 

Deep sequencing

5980 reads, 60 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr7: 1341238-1341313 [-]	sense ENSGALT00000004182 ; ITGAV-201; intron 12
AADN04015323.1: 4663-4738 [-]	sense ENSGALT00000004182 ; ITGAV-201; intron 12

Database links

• EntrezGene:MIR1559
• RNAcentral:URS000075B595_9031
• miRBase Tracker:MI0007284

Mature sequence gga-miR-1559-5p

• Accession: MIMAT0007416
• Sequence: 10 - uucgaugcuuguaugcuacucc - 31
• Deep sequencing: 5956 reads, 5 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS0000142ABC_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1559-5p
  • miRDB:gga-miR-1559-5p

Mature sequence gga-miR-1559-3p

• Accession: MIMAT0026775
• Sequence: 48 - aguuacauguaugcaucgagca - 69
• Deep sequencing: 22 reads, 4 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-1559-3p
  • miRDB:gga-miR-1559-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).