Stem-loop gga-mir-1552

Accession

MI0007277

Description

Gallus gallus gga-mir-1552 precursor miRNA

Literature search

1 open access papers mention gga-mir-1552
(1 sentences)

Sequence

1921 reads, 29 reads per million, 5 experiments

ucuacauggggaggUUAGUGCGCGGUAAGCUAGGGUGugagcugacagcacgCUAGCUGCUCUGCACUGACUGccccugugga
((((((.((((.((((((((((.((((.(((((.((((.........)))).))))))))).)))))))))).))))))))))

Structure

      u    a          C    A     G    gag 
ucuaca gggg ggUUAGUGCG GGUA GCUAG GUGu   c
|||||| |||| |||||||||| |||| ||||| ||||   u
aggugu cccc UCAGUCACGU UCGU CGAUC cacg   g
      -    G          C    -     g    aca 

Annotation confidence High

Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (rzq50a05.g1).

Genome context

chr1: 133682276-133682358 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1552

Mature gga-miR-1552-5p

• Accession: MIMAT0007407
• Description: Gallus gallus gga-miR-1552-5p mature miRNA
• Sequence: 15 - UUAGUGCGCGGUAAGCUAGGGUG - 37
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1552-3p

• Accession: MIMAT0007408
• Description: Gallus gallus gga-miR-1552-3p mature miRNA
• Sequence: 53 - CUAGCUGCUCUGCACUGACUG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964