miRBase entry: mdo-mir-1541

Stem-loop mdo-mir-1541


Accession
MI0007264
Description
Monodelphis domestica mdo-mir-1541 precursor miRNA


Sequence

1402538 reads, 24443 reads per million, 5 experiments
auggagcagaUGGUGUGCUCGUUUGGAUGUGGcaguuugcgagggaugggcaucccaugauccuccag
.(((((...((((.(((((((((....(.(.(((...))).).)))))))))).))))....))))).

Structure
a     -cag    U         UGGA G G   g 
 uggag    aUGG GUGCUCGUU    U U Gca  
 |||||    |||| |||||||||    | | ||| u
 accuc    uacc uacggguag    g a cgu  
g     cuag    c         ---- g g   u 


Annotation confidence Not enough data
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Comments
This sequence is referred to by the unofficial identifier Mdo-27 in [1].

Genome context
chr4: 400891414-400891481 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mdo-mir-1541
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1541

Accession MIMAT0006140
Description Monodelphis domestica mdo-miR-1541 mature miRNA
Sequence 11 - UGGUGUGCUCGUUUGGAUGUGG - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72